DreEX6050771 @ danRer10
Exon Skipping
Gene
ENSDARG00000090183 | gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:ZFIN;Acc:ZDB-GENE-040718-117]
Coordinates
chr8:34457586-34458737:-
Coord C1 exon
chr8:34458583-34458737
Coord A exon
chr8:34458111-34458240
Coord C2 exon
chr8:34457586-34457711
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGCAATGTCTCTGACTGTAGGTT
3' ss Score
8.16
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
Exon sequences
Seq C1 exon
CAGGCTCTCGCAGCCGAAGCCGATCCAACATGGCCCAGGAAGGAGAGACTGAAGCCAGTTCTCAAGAGTCTCTGCAAGAGGTCCCCGAGGAAGTGCTGGTCATCTCTCTAGGAACATCACCACAGACCATTCCCGGGATGATGTCAGAAAACGAG
Seq A exon
GTTCTGACTTTGCATCTTGGAGATGGAGGACAAGGTGACGCCCCTGTCGACGACACCAAATTACATGGCAAGCCTGACAAAACACTGCGCTTCTCACTTTGCAGTGACAACCTGGAGGGCATTTCTGAGG
Seq C2 exon
GGCCGTCTAACCGCTCAAATTCAGTTTCTTCTTTGGATTTGGAAGTGGAGTCCGTGTCAGAAGGAGGACCAGGACCGTCTGGTAGTAACGGTGCAGAAGCCTTACAGCTACTGGAGCACGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090183-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.960 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAACATGGCCCAGGAAG
R:
TAGCTGTAAGGCTTCTGCACC
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]