BtaEX6046166 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011544 | GAPVD1
Description
Bos taurus GTPase activating protein and VPS9 domains 1 (GAPVD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102520]
Coordinates
chr11:96176810-96178785:+
Coord C1 exon
chr11:96176810-96176970
Coord A exon
chr11:96177430-96177496
Coord C2 exon
chr11:96178660-96178785
Length
67 bp
Sequences
Splice sites
3' ss Seq
AATGGCGTTTTATTTTTCAGGTC
3' ss Score
12.21
5' ss Seq
ACGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
CAACTCGGAGCAGAAGTCGCACGAACGTGCTAATGGACTTGCATATGGACCATGAAGGGTCAGCTCAAGAAACCATCCAGGAGGTGCAGCCGGAAGAGGTGTTGGTCATTTCCTTAGGAACAGGTCCCCAGCTTACTCCAGGGATGATGTCAGAAAATGAG
Seq A exon
GTCCTCAACATGCAGCTTTCGGATGGAGGACAAGGAGACGTCCCTGTTGATGAAAACAAACTCCACG
Seq C2 exon
GTCCTTCAAATCGTTCTAATTCAGTGTCCTCACTAGACCTGGAGGGGGAATCTGTGTCAGAGCTTGGAGCAGGACCTTCTGGGAGTAATGGAGTTGAAGCTCTACAGCTGTTAGAGCATGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011544-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCATCCAGGAGGTGCAG
R:
TACTCCCAGAAGGTCCTGCTC
Band lengths:
180-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]