MmuEX0024725 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108356084-108363947:+
Coord C1 exon
chr6:108356084-108356212
Coord A exon
chr6:108360803-108360923
Coord C2 exon
chr6:108363763-108363947
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTCGCCTCTCTCTCTTATAGACC
3' ss Score
11.6
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GCCTGTAACAACACAAGCGACAGGAAGCACGCAGACTCCATTCTGGAGAAGTACGTCACTGAAATCGTGATGAGCATCGTCACCACCTTCTTCAGCTCTCCCTTCTCAGACCAGAGCACCACTCTGCAG
Seq A exon
ACCCGCCAGCCTGTCTTTGTGCAACTCCTGCAAGGCGTGTTCCGAGTTTACCACTGCAACTGGCTGATGCCGAGCCAAAAAGCCTCGGTGGAGAGCTGCATCCGGGTGCTCTCTGACGTAG
Seq C2 exon
CCAAGAGCCGGGCCATAGCCATTCCTGTTGACCTGGACAGCCAAGTCAACAACCTCTTCCTGAAGTCCCACAACATTGTGCAGAAAACAGCCCTGAACTGGCGGTTATCAGCCCGAAACGCCGCTCGCAGAGACTCTGTACTGGCAGCATCCAGAGACTACCGAAATATCATTGAGAGGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'41-41,'41-40,42-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCACGCAGACTCCATTCTG
R:
TGGATGCTGCCAGTACAGAGT
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: