DreEX6092759 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35646187-35654468:-
Coord C1 exon
chr11:35654340-35654468
Coord A exon
chr11:35646898-35647018
Coord C2 exon
chr11:35646187-35646371
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTCTTCTCCAGACT
3' ss Score
10.77
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GTCTGCAACAATACAAGTGACCGCAAACATGCTGACACGACACTAGAAAGCTACGTGACTGAAACCGTGATGAGTATTGTGACGACATTTTTCAGCTCCCCTTTCTCCGACCAGAGCACTAGTTTACAG
Seq A exon
ACTCGGCAGCCTGTGTTTGTGCAGCTCCTGCAAGGGGTTTTCAGAGTTTACCACTGTAGCTGGCTCCTTCCTAGCCAGAAGGGCTCAGTGGAGAGCTGTATTAAAGTTCTATCTGATGTGG
Seq C2 exon
CCAAGAGCAGAGCTATCGCCATCCCGGTGGATTTAGACAGCCAAGTCAACAACCTGTTTGTGAAATCCAATAATGTGGTGCAGAAAACCATCCTCAATTGGAGATTGTCGGCTCGTAATGCATCCAGAAGAGATTCAACGCTCACAGCTTCCAAAGACTACAGGAATATCATCGAAAGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'37-37,'37-36,39-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGACCGCAAACATGCTG
R:
TTCTGGATGCATTACGAGCCG
Band lengths:
245-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]