BtaEX6093958 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21750604-21763744:-
Coord C1 exon
chr22:21763616-21763744
Coord A exon
chr22:21753013-21753133
Coord C2 exon
chr22:21750604-21750788
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCTTGTCCTCTTTCTTGCAGACT
3' ss Score
11.73
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GCCTGTAATAACACGAGCGACAGGAAACACGCAGACTCGATTCTGGAGAAGTACGTCACCGAAATCGTCATGAGCATCGTCACCACGTTCTTCAGTTCTCCCTTCTCAGACCAGAGTACAACTCTGCAG
Seq A exon
ACTCGCCAGCCCGTCTTTGTGCAGCTTCTGCAAGGTGTGTTCCGGGTTTACCACTGCAACTGGCTCATGCCAAGCCAGAAGGCCTCGGTGGAGAGCTGCATCCGGGTGCTCTCTGATGTAG
Seq C2 exon
CCAAGAGCCGGGCCATTGCCATTCCCGTGGACTTGGACAGTCAGGTCAACAACCTCTTCCTCAAGTCCCACAACCTCGTGCAGAAAACCGCCATGAACTGGCGGCTGACGGCCCGCAATGCTGCCCGCAGAGACTCTGTCCTGGCCGCTTCCAGGGACTACCGGAACATCATCGAGAGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'37-36,'37-35,38-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGAAGTACGTCACCGA
R:
GATGTTCCGGTAGTCCCTGGA
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]