GgaEX1030861 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18456584-18496160:+
Coord C1 exon
chr12:18456584-18456712
Coord A exon
chr12:18460136-18460256
Coord C2 exon
chr12:18495907-18496160
Length
121 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTCTTGTGTTCCAGACT
3' ss Score
9.22
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GCTTGCAACAACACCAGCGACAGAAAGCATGCTGACTCCATATTGGAGAAGTACGTTACAGAAATAGTGATGAGTATCGTCACCACTTTCTTCAGTTCCCCATTCTCTGATCAGAGCACTACTTTGCAG
Seq A exon
ACTCGCCAGCCTGTGTTTGTTCAGTTGCTGCAAGGTGTGTTCAGAGTTTACCATTGCAACTGGTTAATGCCAAGCCAAAAGGCATCAGTGGAAAGCTGCATTCGGGTGCTCTCAGATGTAG
Seq C2 exon
TGAGGGAGCCCATGACCCAAATTACAGAGGAAGTCCGGGATCAGTTACTGGAGGCCTCTGCAGCTACAAGAAAGGCGTACAGCACCTACCGGAGGGAAGCTGATTCTGATGACCATTATTCAGCGGCAGAAGGCGCACAGTCAGCAGCAGACAAGAGCAAAGATGACCTGGAGATGAGTGCTGTGATCTCCATAATGCAACCCATCCTCCGCTTCTTGCAGCTGCTCTGTGAAAACCACAACCGGGATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-13/24=11-24
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.247
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.2=34.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCAGCGACAGAAAGCAT
R:
CGCCTTCTGCCGCTGAATAAT
Band lengths:
255-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]