RnoEX0045394 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140439346-140446551:+
Coord C1 exon
chr4:140439346-140439474
Coord A exon
chr4:140443976-140444096
Coord C2 exon
chr4:140446367-140446551
Length
121 bp
Sequences
Splice sites
3' ss Seq
CGTCTCTCTCTCCCTCACAGACT
3' ss Score
11.5
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GCCTGTAACAACACAAGTGACAGGAAGCATGCAGACTCGGTTCTGGAGAAGTACGTCACTGAAATCGTGATGAGCATTGTCACCACCTTCTTCAGCTCTCCCTTCTCAGACCAGAGTACCACTCTGCAG
Seq A exon
ACTCGCCAGCCTGTCTTTGTGCAGCTCCTGCAAGGCGTGTTCCGAGTTTACCACTGCAACTGGTTGATGCCGAGCCAGAAAGCCTCGGTGGAGAGCTGTATCCGCGTGCTCTCTGACGTAG
Seq C2 exon
CCAAGAGCCGGGCCATAGCCATTCCTGTTGACCTAGACAGCCAAGTCAACAACCTCTTCCTGAAGTCCCACAACATTGTGCAGAAAACAGCCATGAACTGGCGGTTATCAGCCCGCAACGCTGCTCGTAGAGACTCTGTCCTGGCAGCTTCCAGAGACTACCGAAATATTATTGAGAGGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'53-53,'53-52,54-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCATGCAGACTCGGTTCTG
R:
GCTGCCAGGACAGAGTCTCTA
Band lengths:
253-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]