MmuEX0027470 @ mm10
Exon Skipping
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123351822-123355267:-
Coord C1 exon
chr4:123355056-123355267
Coord A exon
chr4:123354479-123354580
Coord C2 exon
chr4:123351822-123351951
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTTGGATCTCTGTTTCACAGACT
3' ss Score
7.14
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
CACGAGGCAGAACTAACATAGAACTTAGAGAGAAATTCATCCTGCCAGAAGGGGCATCTCAGGGGATGACTCCATTCCGGTCACGGGGTCGAAGATCCAAACCATCTTCCCGGGCAGCTTCTCCCACCCGCTCCAGCTCAAGTGCTAGTCAGAGTAACCACAGCTGTACATCCATGCCTTCTTCTCCAGCCACCCCAGCCAGCGGGACCAAG
Seq A exon
ACTCCACTTCAGTTCTCTCGATGTTATGACAAACCCTGGTTGATAAACAGTAAAGCTGTCAAGGACAGCCATTGTCCTGACCTCCAGCTCCTCAGCCCTGAG
Seq C2 exon
GTTATTTCGTCATCAGGCAGCAAGCTGAAGCGACCGACACCAGCTTTTCACTCCAGCCGAACATCCCTTGCTGGTGACACCAGCAACAGCTCTTCCCCAGCCTCCACAGGTGCCAAAGCCAACCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.841 A=0.429 C2=1.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.5=2.8)
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGGGCATCTCAGGGGAT
R:
GTGTCACCAGCAAGGGATGTT
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types