GgaEX0004824 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5716840-5719172:+
Coord C1 exon
chr23:5716840-5717051
Coord A exon
chr23:5717498-5717608
Coord C2 exon
chr23:5719049-5719172
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTTTCCATTCCACAGACT
3' ss Score
8.15
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
CACGAGGACGGACCAACCTCGAGCTCCGGGAGAAGTTCATCCTGCCGGAGGGCGCCTCGCAGGGCATGACGCCGTTCCGCTCACGGGGCCGAAGGTCCAAACCGTCCTCCCGGGCGGCCTCCCCGACGCGCTCCAGCTCCAGCGCCAGCCAGAGCAACCACAGCTGCGCCTCGATGCCATCGTCTCCCGCAACCCCGGCCAGCGGAGCCAAG
Seq A exon
ACTCCTCATCACTTCTCTCGATGTTATGACAAACCCTGGTTGATAAACAGTAAAGCGGGCACCCCGCTGCGGGGATCTGATTACCCCGACCTCCAGCTCCCCAGCTCTGAG
Seq C2 exon
GTGACGCCAGCAGCGGGCAGCAAACTGAAGCGTCCCACCTTCCACTCCAGCCGCACCTCGCTGGTTGGGGACACCAGCAACAGCTCCTCGCCCGTCTCCTCGGGTGCCAAAAGCGGTCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.838 A=0.649 C2=1.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.7=2.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGGACCAACCTCGAG
R:
AAGGTGGGACGCTTCAGTTTG
Band lengths:
250-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]