BtaEX0021015 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107181558-107185291:-
Coord C1 exon
chr3:107185080-107185291
Coord A exon
chr3:107184441-107184551
Coord C2 exon
chr3:107181558-107181687
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTGGATTTCCGTTTCACAGACT
3' ss Score
7.02
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
CTCGAGGTAGAACTAACATCGAACTTAGAGAGAAATTCATCCTCCCTGAGGGGGCATCCCAGGGCATGACCCCTTTCCGGTCCCGGGGTCGAAGGTCCAAACCATCTTCCCGCGCAGCCTCCCCTACTCGCTCCAGCTCAAGTGCTAGTCAGAGTAACCACAGCTGTACATCCATGCCGTCTTCTCCAGCCACCCCAGCCAGTGGCACCAAG
Seq A exon
ACTCCGCTTCAGTTCTCTCGCTGTTATGACAAACCCTGGCTGGTAAACAGTAGAGCTGGCACCCCTGTCAGGGGCAGCCACTATCCTGACCTCCAGCTGCCCAGCCCCGAG
Seq C2 exon
GTTATTCCATCAACAGGCCGCAAGTTGAAACGACCCACACCCGCCTTCCATTCAAGTCGAACGTCACTTGCCGGCGATACTAGCAACAGTTCTTCCCCCGCGTCCACGGGTGCCAAAACTAACCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=0.676 C2=1.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.5=2.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000033270fB4007
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAAACCATCTTCCCGC
R:
GTTAGTTTTGGCACCCGTGGA
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development