DreEX0044252 @ danRer10
Exon Skipping
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35456209-35460756:-
Coord C1 exon
chr19:35460545-35460756
Coord A exon
chr19:35458254-35458367
Coord C2 exon
chr19:35456209-35456314
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTGCTACCGCATTTCCCAGTCC
3' ss Score
5.88
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTCGCGGACGCACCAACCTGGAGCTTCGAGAGAAGTTCATTCTTCCAGAGGGAGCCACGCAGGGTTTGGCGGCCTTCCGGTCCCGGGGTCGCCGGTCCAAGCCTTCGTCCCGCACAGCTTCACCCACGCGCTCGTCCTCATCTGCGTCACACAGTGCCCACAGCTGCGCCTCTGTGCCCTCTGCACCCGCTACACCCACAGCCTCCTCAAGG
Seq A exon
TCCTCCCAATCCCAATCTCGTGGCTATGCCAAGCCCTGGCTGGCACACAGTAAAACTCCAACTCCAACCAAGTGCCAGTCCTGCCCAGAGCACAGCCAGACCCCTGGGCATGAG
Seq C2 exon
GGAGGCTCCACGACTAAGCTGAAGAGACCAACGTTTCATTCCAGCCGCGGCTCCTTAACTGGGGAAAACGGTGGAACACCAACAGCTGCTAAACCCGGACGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.5=2.8)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTCTTCCAGAGGGAGCCA
R:
GTTCCACCGTTTTCCCCAGTT
Band lengths:
253-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]