RnoEX0051763 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141041697-141044999:-
Coord C1 exon
chr5:141044788-141044999
Coord A exon
chr5:141044204-141044314
Coord C2 exon
chr5:141041697-141041826
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTGGATTTCTGTTTCACAGACT
3' ss Score
7.46
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
CACGGGGCAGAACTAACATAGAACTTAGAGAGAAATTCATCCTGCCAGAAGGGGCATCTCAGGGGATGACTCCATTCCGGTCACGGGGTCGAAGATCCAAACCATCTTCCCGGGCAGCTTCTCCCACCCGCTCCAGCTCAAGTGCTAGTCAGAGTAACCACAGCTGTACGTCCATGCCTTCTTCTCCAGCCACCCCAGCCAGTGGGACCAAG
Seq A exon
ACTCCACTTCAGTTCTCTCGCTGCTATGACAAACCCTGGTTGGTAAACAGTAAAGCTGGCACACATGTCAAGGACAGCCATTGTCCTGACCTCCAGCTACTCAGCCCTGAG
Seq C2 exon
GTTATTTCATCAACAGGCAGCAAGCTGAAAAGACCAACACCAACTTTTCATTCTAGCCGAACATCCCTTGCTGGTGACACCAGCAATAGTTCTTCCCCAGCTTCCACAGGTGCCAAAACTAATCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=0.595 C2=1.000
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.7=2.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000084109fB8240
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACTCCATTCCGGTCACG
R:
CTGTGGAAGCTGGGGAAGAAC
Band lengths:
257-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]