MmuEX0039246 @ mm10
Exon Skipping
Gene
ENSMUSG00000040423 | Rc3h1
Description
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
Coordinates
chr1:160955815-160962484:+
Coord C1 exon
chr1:160955815-160955979
Coord A exon
chr1:160959401-160959553
Coord C2 exon
chr1:160962271-160962484
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCTATTTTCCCCCTCTATAGTTT
3' ss Score
7.98
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GATCCTCCTTATAGTCGGCTTCCTCCTCCCCAACCCCATCCTAGTCTGGATGAGCTACATCGAAGGCGGAAGGAAATAATGGCCCAGCTAGAGGAAAGAAAAGTCATCTCTCCACCTCCTTTTGCACCGTCACCAACATTGCCTCCTGCATTCCATCCAGAGGAA
Seq A exon
TTTTTGGATGAAGACTTGAAGGTAGCCGGAAAATACAAAGCAAATGATTATAGCCAGTATTCTCCTTGGTCATGTGATACCATCGGCTCCTACATTGGAACCAAAGATGCAAAACCCAAAGATGTTGTGGCAGCGGGGAGTGTGGAAATGATG
Seq C2 exon
AATGTAGAAAGTAAAGGAACGAGAGAGCAGAGGTTGGACCTTCAGAGAAGAGCAGTGGAGACGAGCGATGATGACCTCATCCCGTTTGGAGACCGACCAACAGTCTCTCGATTCGGTGCCATCTCTCGAACATCCAAAACACTGTATCAGGGTGCTGGCCCACTGCAAGCTATAGCACCTCAGGGAGCACCCACAAAATCTATTAACATTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040423_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=0.281 C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCTACATCGAAGGCGG
R:
AGAGATGGCACCGAATCGAGA
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types