RnoEX0074843 @ rn6
Exon Skipping
Gene
ENSRNOG00000002750 | Rc3h1
Description
ring finger and CCCH-type domains 1 [Source:RGD Symbol;Acc:1563512]
Coordinates
chr13:78775999-78781697:+
Coord C1 exon
chr13:78775999-78776163
Coord A exon
chr13:78778960-78779112
Coord C2 exon
chr13:78781484-78781697
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCCCTCTATCTATAGTTT
3' ss Score
10.17
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GATCCTCCTTATAGTCGACTTCCTCCTCCTCAACCCCATCCTAGTCTGGATGAGCTACATAGAAGGCGGAAGGAAATAATGGCCCAACTAGAAGAAAGAAAGGTTATCTCTCCGCCTCCTTTTGCACCTTCACCAACATTGCCTCCTGCGTTCCATCAAGAGGAA
Seq A exon
TTTTTGGATGAAGACTTGAAGGTAGCTGGAAAATACAAAGCAAATGATTATAGCCAATATTCTCCTTGGTCATGTGATACCATCGGCTCCTACATTGGAACCAAAGATGCAAAACCCAAAGATGTTGTGGCAGCAGGGAGTGTGGAAATGATG
Seq C2 exon
AATGTAGAAAGTAAAGGAATGAGAGACCAGAGGTTGGATCTTCAGAGAAGAGCAGTGGAAACTAGTGATGATGACCTTATCCCATTTGGCGACCGACCAACGGTATCTCGATTTGGTGCCATCTCTCGAACATCCAAAACACTGTATCAGGGTGCTGGCCCAATGCAAGCTCTGGCACCTCAGGGAGCACCCACAAAATCTATTAACATTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002750_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCCTCCTCAACCCCAT
R:
GTCGGTCGCCAAATGGGATAA
Band lengths:
244-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]