GgaEX0006196 @ galGal3
Exon Skipping
Gene
ENSGALG00000004587 | RC3H1
Description
NA
Coordinates
chr8:7682659-7685531:+
Coord C1 exon
chr8:7682659-7682790
Coord A exon
chr8:7683416-7683568
Coord C2 exon
chr8:7685321-7685531
Length
153 bp
Sequences
Splice sites
3' ss Seq
AGATCTTTGTTTTTGTACAGTAC
3' ss Score
5.18
5' ss Seq
GCGGTATGT
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCTCATCCTAGCCTGGATGAACTTCACCGACGAAGGAAAGAGATCATGGCACAGTTAGAGGAGAGGAAGGTTATTTCCCCACCTCCTTTTGCACCTTCTCCAACCTTGCCTCATCCTTTTCATTCAGAAGAG
Seq A exon
TACTTAGATGAAGACCTGAAGGTAGCTGGGAAATACAAAGGAAATGACTACAGCCAGTACTCTCCCTGGTCCTGTGACACCATCGGCTCCTACATTGGAACCAAAGATGCAAAACCCAAAGATGTTGTGGCAGCAAGGAGTGTGGAGATGGCG
Seq C2 exon
AACGTGGATAGTAAAGCCATGCGTGACCAACGATTAGACATGCAGAGAAGAGCGGCAGAGGCTGGTGATGATGACCTCATTCCATTTGGAGACCGACCAACTGTGTCGAGATTTGGGGCTATCTCTCGTACTTCCAAAGCGATGTACCAGAATTCTGGTCCCATTCAGGCCATGGCAGTTCAGGGAGCTTCCACCAAATCAATCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587-'16-19,'16-18,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=0.196 C2=0.718
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCCACCTCCTTTTGCAC
R:
CTGAACTGCCATGGCCTGAAT
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]