DreEX6025493 @ danRer10
Exon Skipping
Gene
ENSDARG00000063182 | RC3H1 (2 of 2)
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr2:7291630-7294434:-
Coord C1 exon
chr2:7294279-7294434
Coord A exon
chr2:7291936-7292082
Coord C2 exon
chr2:7291630-7291849
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTGAACGTGTGCAGTAT
3' ss Score
5.41
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GACCCGTATCGCTCTCAGCCCAGTCTGGATGACTTGCATCGCAGGCGTAAGGAGCTGCTCATCCAGCTAGAGGAGAGGAAAGTCATCTCTCCTCCACCCTTCGCTGCCTCCCCAACTCTCCCCACACACCCGTTCCCCCACGACTACCCTCAGGAG
Seq A exon
TATTTGGAGGATGGCTCTAAGGCCTTTGGAAGTCGGGAGCCAGACTACGCTGGGCAGTATTCCCCCTGGTCATGTGACACCATAGGATCATACATCGGCTCCAAGGACGCTAAACCAAAAGATGTCAGTAGTGCTGTGGAGATGATG
Seq C2 exon
ACTGCAGAGGGAAAAGTTTTGCGTGAGCCTGCGCTGGACACACAGCGGCGCTCTGCAGAAGCCAAAGACGACGATCCCATCATTCCCTTTGGCCCTCTGCCCACTGTGTCTCCATTTGGTGCCATTTCGCGTACCTCTAAAACGGGTTACCAGACCACTGGGCCTGTGCAGGCCATAGCATCCTCACAGGCCTCAGGGCCCAAACACATGACGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063182-'16-17,'16-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.652 C2=0.911
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGCTCTCAGCCCAGTCTG
R:
GAGGGCCAAAGGGAATGATGG
Band lengths:
247-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]