MmuEX0039246 @ mm9
Exon Skipping
Gene
ENSMUSG00000040423 | Rc3h1
Description
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
Coordinates
chr1:162885946-162892615:+
Coord C1 exon
chr1:162885946-162886110
Coord A exon
chr1:162889532-162889684
Coord C2 exon
chr1:162892402-162892615
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCTATTTTCCCCCTCTATAGTTT
3' ss Score
7.98
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GATCCTCCTTATAGTCGGCTTCCTCCTCCCCAACCCCATCCTAGTCTGGATGAGCTACATCGAAGGCGGAAGGAAATAATGGCCCAGCTAGAGGAAAGAAAAGTCATCTCTCCACCTCCTTTTGCACCGTCACCAACATTGCCTCCTGCATTCCATCCAGAGGAA
Seq A exon
TTTTTGGATGAAGACTTGAAGGTAGCCGGAAAATACAAAGCAAATGATTATAGCCAGTATTCTCCTTGGTCATGTGATACCATCGGCTCCTACATTGGAACCAAAGATGCAAAACCCAAAGATGTTGTGGCAGCGGGGAGTGTGGAAATGATG
Seq C2 exon
AATGTAGAAAGTAAAGGAACGAGAGAGCAGAGGTTGGACCTTCAGAGAAGAGCAGTGGAGACGAGCGATGATGACCTCATCCCGTTTGGAGACCGACCAACAGTCTCTCGATTCGGTGCCATCTCTCGAACATCCAAAACACTGTATCAGGGTGCTGGCCCACTGCAAGCTATAGCACCTCAGGGAGCACCCACAAAATCTATTAACATTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040423_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=0.275 C2=0.611
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCTACATCGAAGGCGG
R:
AGAGATGGCACCGAATCGAGA
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: