GgaEX0006196 @ galGal4
Exon Skipping
Gene
ENSGALG00000004587 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr8:7347310-7350182:+
Coord C1 exon
chr8:7347310-7347441
Coord A exon
chr8:7348067-7348219
Coord C2 exon
chr8:7349972-7350182
Length
153 bp
Sequences
Splice sites
3' ss Seq
AGATCTTTGTTTTTGTACAGTAC
3' ss Score
5.18
5' ss Seq
GCGGTATGT
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCTCATCCTAGCCTGGATGAACTTCACCGACGAAGGAAAGAGATCATGGCACAGTTAGAGGAGAGGAAGGTTATTTCCCCACCTCCTTTTGCACCTTCTCCAACCTTGCCTCATCCTTTTCATTCAGAAGAG
Seq A exon
TACTTAGATGAAGACCTGAAGGTAGCTGGGAAATACAAAGGAAATGACTACAGCCAGTACTCTCCCTGGTCCTGTGACACCATCGGCTCCTACATTGGAACCAAAGATGCAAAACCCAAAGATGTTGTGGCAGCAAGGAGTGTGGAGATGGCG
Seq C2 exon
AACGTGGATAGTAAAGCCATGCGTGACCAACGATTAGACATGCAGAGAAGAGCGGCAGAGGCTGGTGATGATGACCTCATTCCATTTGGAGACCGACCAACTGTGTCGAGATTTGGGGCTATCTCTCGTACTTCCAAAGCGATGTACCAGAATTCTGGTCCCATTCAGGCCATGGCAGTTCAGGGAGCTTCCACCAAATCAATCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=0.235 C2=0.761
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCCACCTCCTTTTGCAC
R:
CTGAACTGCCATGGCCTGAAT
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]