MmuEX0041333 @ mm9
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:116948122-116952084:-
Coord C1 exon
chr7:116951923-116952084
Coord A exon
chr7:116949557-116949754
Coord C2 exon
chr7:116948122-116948274
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCATGGCACTTCCTTTCCAGACA
3' ss Score
7.16
5' ss Seq
CCTGTGCGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
TTCAATGCTCGCCTGGGCATTTCTACAACACCACCACACACCGATGTATCCGATGCCCACTAGGGACATACCAGCCTGAATTTGGAAAAAATAATTGTGTTTCCTGCCCGGGCAATACTACCACCGACTTTGATGGCTCCACCAACATAACACAGTGTAAAA
Seq A exon
ACAGAAAGTGTGGAGGGGAGCTGGGGGATTTCACAGGGTATATTGAATCCCCAAACTACCCTGGGAACTACCCAGCCAACTCAGAGTGCACCTGGACCATCAACCCACCCCCCAAACGCCGGATCCTGATTGTGGTCCCTGAGATCTTCCTGCCCATAGAGGATGACTGCGGTGACTACCTGGTGATGCGGAAAACCT
Seq C2 exon
CTTCATCAAATTCTGTGACCACATATGAAACCTGCCAGACTTATGAACGCCCCATCGCCTTCACCTCCAGGTCAAAGAAACTGTGGATTCAGTTCAAGTCCAATGAAGGGAACAGTGCCCGGGGGTTCCAGGTTCCCTATGTGACATACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-'19-23,'19-22,21-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=87.3)
A:
PF0043115=CUB=PU(57.3=94.0)
C2:
PF0043115=CUB=PD(41.8=88.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACACACCGATGTATCCG
R:
GGCACTGTTCCCTTCATTGGA
Band lengths:
250-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: