DreEX6005392 @ danRer10
Exon Skipping
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28299947-28301658:-
Coord C1 exon
chr7:28301497-28301658
Coord A exon
chr7:28300288-28300485
Coord C2 exon
chr7:28299947-28300099
Length
198 bp
Sequences
Splice sites
3' ss Seq
ATTTAATTTATTCCTGCCAGACA
3' ss Score
5.57
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
TTCAGTGCTCCCCTGGGCATTACTACAATACCAGCACCCATCGTTGTATCCGTTGCCCAGTTGGAACTTATCAGATGGAGTTTGGCCAAAACTACTGCATTGCCTGTCCTGGAAACACTACCACTGATTTTGATGGATCCACAAACATAATGCAGTGCAAAA
Seq A exon
ACAGACACTGTGGAGGAGAGCTGGGAGAATTCACTGGCTACATCGAATCCCCTAACTACCCTGGCAACTACCCTGCCAACATCGAGTGCACCTGGACCATCACCCCCCCACCCAAACGCAGGATCCTAGTGGTGGTGCCTGAGATCTACCTGCCCATTGAGGACGAGTGCGGGGACTATTTAGTGATGCGGAAGAGCT
Seq C2 exon
CTCTGCCCAATTCAGTGACGACTTACGAGACGTGCCAGACGTACGAGCGGCCCATCGCCTTCACCTCCCGCTCCAAGAAACTCTGGATCCAGTTCCGCTCCAATGAAGGAAACAGTGGAAAAGGCTTTCAAGTGCCTTACGTGACGTATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362-'23-31,'23-29,25-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=87.3)
A:
PF0043115=CUB=PU(57.3=94.0)
C2:
PF0043115=CUB=PD(41.8=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCACCCATCGTTGTATCC
R:
TCCTTCATTGGAGCGGAACTG
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]