BtaEX6059341 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44149199-44153729:+
Coord C1 exon
chr15:44149199-44149360
Coord A exon
chr15:44151975-44152172
Coord C2 exon
chr15:44153577-44153729
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCTGGCATTTCCTCTTCCAGACA
3' ss Score
9.66
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
Exon sequences
Seq C1 exon
TTCAGTGTTCACCTGGACATTTCTACAACACCACTACTCACCGATGCATTCGTTGCCCAGCAGGAACATACCAGCCAGAATTTGGAAAAAATCATTGTGTTTCCTGCCCAGGAAATACCACGACTGACTTTGATGGCTCCACAAACATAACCCAGTGTAAAA
Seq A exon
ACAGAAGATGCGGAGGGGAGCTGGGTGATTTCACCGGGTACATCGAATCCCCAAACTACCCAGGCAATTACCCAGCCAACACAGAATGTACCTGGACCATCAATCCACCCCCTAAGCGCCGCATCTTGATTGTGGTCCCTGAGATCTTCCTGCCCATAGAGGACGACTGTGGCGACTACCTCGTGATGCGGAAAACTG
Seq C2 exon
CTTCATCCAATTCTGTGACAACATATGAAACCTGCCAGACCTACGAACGCCCCATCGCCTTCACCTCCAGATCCAAGAGGCTGTGGATTCAGTTTAAGTCCAATGAGGGGAACAGCGCCAGAGGGTTCCAGGTCCCATACGTGACATACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573-'30-35,'30-34,32-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=87.3)
A:
PF0043115=CUB=PU(57.3=94.0)
C2:
PF0043115=CUB=PD(41.8=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGAACATACCAGCCAG
R:
TGTCACGTATGGGACCTGGAA
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]