RnoEX0078733 @ rn6
Exon Skipping
Gene
ENSRNOG00000013123 | Scube2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:RGD Symbol;Acc:1563998]
Coordinates
chr1:174434029-174438144:-
Coord C1 exon
chr1:174437983-174438144
Coord A exon
chr1:174436142-174436339
Coord C2 exon
chr1:174434029-174434181
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCATGGCACTTCCTTTCCAGACA
3' ss Score
7.16
5' ss Seq
CCTGTGCGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
TTCAATGTTCGCCTGGGCATTTCTACAACACCACCACACACCGATGTATCCGTTGCCCACTGGGAACATACCAGCCTGAATTTGGAAAAAATAATTGTGTTTCCTGCCCGGGAAATACTACCACCGACTTTGACGGCTCCACCAACATAACACAGTGTAAAA
Seq A exon
ACAGAAAGTGTGGAGGGGAGCTGGGGGATTTCACAGGGTACATTGAATCCCCAAACTACCCTGGGAACTACCCAGCCAACTCAGAGTGCACCTGGACCATTAACCCACCCCCCAAACGCCGGATCCTGATTGTGGTCCCTGAGATCTTCCTGCCCATAGAGGATGACTGCGGTGACTACCTGGTGATGCGGAAAACCT
Seq C2 exon
CTTCATCAAATTCTGTGACCACATATGAAACCTGCCAGACCTATGAACGCCCCATCGCCTTCACCTCCAGATCAAAGAAGCTGTGGATTCAGTTCAAGTCCAATGAAGGGAACAGTGCCCGAGGATTCCAGGTTCCCTATGTGACATACGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013123-'21-26,'21-24,24-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=87.3)
A:
PF0043115=CUB=PU(57.3=94.0)
C2:
PF0043115=CUB=PD(41.8=88.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACCGATGTATCCGTTGC
R:
GGCACTGTTCCCTTCATTGGA
Band lengths:
246-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]