MmuEX0041871 @ mm9
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:28985700-28994959:+
Coord C1 exon
chr2:28985700-28985910
Coord A exon
chr2:28989442-28989551
Coord C2 exon
chr2:28994740-28994959
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTGTTATCTTTCTATCTAGATG
3' ss Score
9.79
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTTTTATGGGAGCTAGAAACCTTACGCCTCGTAAGTCACTTTGAGAAGTCCATGAAGGCAGAAGCTGAAGATGACGATGATTTATATATAGTAGACAACAATGGAGAGGAACAGCTGTTTGACTGTAGTGGCCAAGATTTTGAAAATAAGCTTCGAGTTCCTCTTTTTGAAATACTGAAGTACCCTTACTTGCTTCTGCATGAGCGTGTTA
Seq A exon
ATGAACTGTGTGTGGAAGCGCTTTGCCGAATGGAACAAAACAATTGCTCCTTTCAGGTTTTTGACAAATATCCAGGCATCTATTTGTTTTTGGTTCATCCCAATGAAATG
Seq C2 exon
GTTCGGCGATGGGCTATTCTGACTGCAAGAAACCTGGGGAAGGTGGACAGAGATGACTATTATGACTTACAGGAAGTTTTAACTTGCCTTTTTAAAGTCATTGAGCTGGGGCTTTTGGAAAGTCCAGACATTTACACATCTTCTGTGCTTGAAAAAGGCAAACTGATCCTTTTGCCTGCACACATGTATGATACTACCAACTACAAAAACTATTGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535-'10-10,'10-8,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCTAGAAACCTTACGCC
R:
ATCTCTGTCCACCTTCCCCAG
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: