BtaEX6046957 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102424865-102438198:-
Coord C1 exon
chr11:102437988-102438198
Coord A exon
chr11:102435684-102435793
Coord C2 exon
chr11:102424865-102425084
Length
110 bp
Sequences
Splice sites
3' ss Seq
GCTTTATTTTTTCTGTTTAGATG
3' ss Score
8.92
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTTTTATGGGAATTAGAAACCTTACGTCTCATAAATCACTTTGAAAGATCCATGAAGGCAGAAATTGGAGATGATGATGAGTTATATATAGTAGACAACAACGGAGAGGCACAGCTGTTCGATTTCACTGGCCAAGACTTTGAAAATAAGCTTCGAGTTCCTCTTCTTGAAATACTGAAATATCCATATCTGCTTTTACATGAGCATGTCA
Seq A exon
ATGAATTATGTGTTGAAGCACTTTGCCGGATGGAACAAGCTAATTGCTCCTTTCAAGTTTTTGACAAACATCCAGGGATCTATTTATTTTTGGTTCATCCCAATGAAATG
Seq C2 exon
GTTCGGCGTTGGGCTATCCTGACTGCAAGAAACTTGGGGAAAGTGGATAGAGATGATTACTATGACTTACAGGAGGTTTTGACTTGCCTTTTTAAAGTTATTGTTTTTTTACTTTTAGAAAACCCAGACATTTATACTTCTTCTGTCCTTGAGAAGGGTAAACTGGTTCTTCTGCCTTCACACATGTATGATACTGCCAACTACAAAAACTATTGGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCGAGTTCCTCTTCTTGA
R:
TGTGTGAAGGCAGAAGAACCA
Band lengths:
247-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]