RnoEX0079939 @ rn6
Exon Skipping
Gene
ENSRNOG00000013491 | Setx
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7688798-7695734:+
Coord C1 exon
chr3:7688798-7689008
Coord A exon
chr3:7692055-7692164
Coord C2 exon
chr3:7695515-7695734
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTGTTGTCTTTCTGTTTAGATG
3' ss Score
9.8
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTTTTATGGGAGCTAGAAACCTTACGCCTCATAAGTCACTTTGAAAAGTCCATGAAGGCAGAAGCTGAGGATGACGACGAGTTATATATAGTAGACAACAATGGAGAGGAGCAGCTCTTTGACTGTAGTGGCCAAGATTTTGAAAATAGGCTTAGAGTTCCTCTTTTTGAAATACTGAAGTACCCTTACTTGCTTCTGCATGAGCGTGTTA
Seq A exon
ATGAACTGTGTGTGGAAGCGCTTTGTCGAATGGAACAAAACAATTGCTCCTTTCAGGTCTTTGACAAATACCCAGGCATCTATTTGTTTTTGGTTCATCCCAATGAAATG
Seq C2 exon
GTTCGGCGATGGGCTATTCTGACTGCAAGAAACCTGGGGAAGGTGGACAGAGATGACTATTATGACTTACAGGAAGTTTTAACTTGCCTTTTTAAAGTCATTGAATTGGGGCTTTTGGAAAGTCCAGACATTTACACATCTTCTGTGCTTGAAAAAGGCAAACTGATCCTTTTGCCTGCACACATGTATGATACTACCAACTACAAAAACTATTGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCTAGAAACCTTACGCC
R:
ATCTCTGTCCACCTTCCCCAG
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]