GgaEX6015271 @ galGal4
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr17:6512917-6513729:-
Coord C1 exon
chr17:6513519-6513729
Coord A exon
chr17:6513259-6513368
Coord C2 exon
chr17:6512917-6513136
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATAAATATTTCTCCTTTTAGGTG
3' ss Score
10.48
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTTTTATTGGAATTGGAAACATCCCGTCTCGTAGCCCACATTGAAAAATCCATAAGAGAAGAAGCTGGAGAAGATGATGAGTTGTTTATAGTGGATGAGAATGGAGAGACACAGCTGCCTGTTTATGTTGGACCAGATTTTGAGAATAACCTGAGAGTGCCACTTCTAGAAGTGCTGAAATACCCATATCTGCTGCTGCATGAGAAAGTCA
Seq A exon
GTGAGCTTTGTGTAGAAGTGCTGTGTAGAATGGAAGAAAATCACACCTCCTTTCAGGTTTTTGAGAAATATCCAGGAATTTATCTATTTTTGGTACACCCAAATGAAGTG
Seq C2 exon
ATTCGTCGTTGGGCCATCCTGACAGCAAGGAATTTAGGGAAGGTTGACAGGGATGATTACTATGACTTACAGGAAGTGTTGACTTGCTTGTTTAAAGTTATTGAACTGGGGCTTTTTGAGAGTCCAGATATTTACAGATCTTCAGTGATTGAAAAGGGGAAACTCATTCTTCTGCCATCCCATTTATATGATAATAGCAACTACAAGAACTATTGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661-'11-6,'11-4,12-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACATCCCGTCTCGTAGCC
R:
TCATCCCTGTCAACCTTCCCT
Band lengths:
252-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]