MmuEX0041882 @ mm9
Exon Skipping
Gene
ENSMUSG00000043535 | Setx
Description
senataxin [Source:MGI Symbol;Acc:MGI:2443480]
Coordinates
chr2:28989442-28995908:+
Coord C1 exon
chr2:28989442-28989551
Coord A exon
chr2:28994740-28994959
Coord C2 exon
chr2:28995789-28995908
Length
220 bp
Sequences
Splice sites
3' ss Seq
TTTATAATACAATTACTTAGGTT
3' ss Score
4.7
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATGAACTGTGTGTGGAAGCGCTTTGCCGAATGGAACAAAACAATTGCTCCTTTCAGGTTTTTGACAAATATCCAGGCATCTATTTGTTTTTGGTTCATCCCAATGAAATG
Seq A exon
GTTCGGCGATGGGCTATTCTGACTGCAAGAAACCTGGGGAAGGTGGACAGAGATGACTATTATGACTTACAGGAAGTTTTAACTTGCCTTTTTAAAGTCATTGAGCTGGGGCTTTTGGAAAGTCCAGACATTTACACATCTTCTGTGCTTGAAAAAGGCAAACTGATCCTTTTGCCTGCACACATGTATGATACTACCAACTACAAAAACTATTGGCTAG
Seq C2 exon
GTATTTGCATGTTGTTGACTATTCTTGAGGAGCAAGCCATGGATTCACTGTTGCTGGGCTCAGACAAGCAAAATGATTTTATGCAATCAATTCTTCACACCATGGAGAAGCAATCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043535_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACTGTGTGTGGAAGCGC
R:
TCCGATTGCTTCTCCATGGTG
Band lengths:
228-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: