RnoEX0079944 @ rn6
Exon Skipping
Gene
ENSRNOG00000013491 | Setx
Description
senataxin [Source:RGD Symbol;Acc:1565575]
Coordinates
chr3:7692055-7696496:+
Coord C1 exon
chr3:7692055-7692164
Coord A exon
chr3:7695515-7695734
Coord C2 exon
chr3:7696377-7696496
Length
220 bp
Sequences
Splice sites
3' ss Seq
TTTATAATACAATTGCTTAGGTT
3' ss Score
4.66
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATGAACTGTGTGTGGAAGCGCTTTGTCGAATGGAACAAAACAATTGCTCCTTTCAGGTCTTTGACAAATACCCAGGCATCTATTTGTTTTTGGTTCATCCCAATGAAATG
Seq A exon
GTTCGGCGATGGGCTATTCTGACTGCAAGAAACCTGGGGAAGGTGGACAGAGATGACTATTATGACTTACAGGAAGTTTTAACTTGCCTTTTTAAAGTCATTGAATTGGGGCTTTTGGAAAGTCCAGACATTTACACATCTTCTGTGCTTGAAAAAGGCAAACTGATCCTTTTGCCTGCACACATGTATGATACTACCAACTACAAAAACTATTGGCTAG
Seq C2 exon
GTATTTGCATGTTGTTGACTATTCTTGAGGAGCAAGCCATGGATTCACTGTTGCTGGGTTCAGACAAACAAAATGATTTTATGCAATCAATTCTTCACACCATGGAGAAGCAATCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013491_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACTGTGTGTGGAAGCGC
R:
TCCGATTGCTTCTCCATGGTG
Band lengths:
228-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]