DreEX6082833 @ danRer10
Exon Skipping
Gene
ENSDARG00000022996 | setx
Description
senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
Coordinates
chr21:3784327-3787131:+
Coord C1 exon
chr21:3784327-3784436
Coord A exon
chr21:3784537-3784756
Coord C2 exon
chr21:3787021-3787131
Length
220 bp
Sequences
Splice sites
3' ss Seq
TGGTTCTCTTTCCTATCCAGGTG
3' ss Score
11.28
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
Exon sequences
Seq C1 exon
CTGATATGGTGGTTAGGGTCTTGTACAAGTTGCAGGATTGGCAGCAAACTTTGAGTTGGTCTGAGAAGTATCAGGGAACATATCTGCTTCTCGTTCATCCCGATGAAAAG
Seq A exon
GTGCGTCGCTGGGCAATTGATCTAGCAAAAACCTTAAAGAGTGTGGACCGGGATGCCTATTATGACCTTCGGGAGATCTTCGCTTGCATGTTTCAAATAATCGAGCTTGGAATATCTTTAGATTTACCAGATTTGGATCCTGGGTGTTATGCAAGCGGAAAAGTGCCCATGCTGCCCTCTCACCTCTATGATGCAAAGAACAAGAAGAACTACTGGCTAG
Seq C2 exon
GCATCTGTATGTTACTAACACAGCTCAGCGCTGAGGCAATGGACTCTCTCTTCGTGGGACAGTTTAATATCCCGCTTTGCATACTCAATACAATGGATGCATTGAAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022996-'6-5,'6-3,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127262=SEN1_N=FE(22.5=100)
A:
PF127262=SEN1_N=PD(13.1=28.4)
C2:
PF127262=SEN1_N=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATATGGTGGTTAGGGTCTTGT
R:
ATGCATCCATTGTATTGAGTATGCA
Band lengths:
212-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]