MmuEX0044123 @ mm9
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:95182589-95186001:+
Coord C1 exon
chr1:95182589-95182671
Coord A exon
chr1:95183505-95183600
Coord C2 exon
chr1:95185885-95186001
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCACCCTTAGCTTCTCCTAGAAC
3' ss Score
1.7
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTTCTCAGAGCTTGTAGATGGAAGAGGAAGAGTGAGTGCCAGGTTTGGTGGCTTGCCCAGCAGAGCAGTAACTGTGAGATCAC
Seq A exon
AACCCACCACTCCGGTGCCACTCAAGAACACAGAGGCCCCTGAGCAGGTCCATCTGGCCCTCCAGCTACCCAAGAACAGCAGCAAAGACACAGAAA
Seq C2 exon
GTACCCCTGGCAGCTGTTCAGAAGATGCTTGTCAGAATGGAGGCACCTGTGTCCCAGGTGCCGATGCCCACAGCTGTGACTGCAGGCCTGGGTTCAAAGGCAGACACTGTGAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=1.000 C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=77.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAGTGAGTGCCAGGTT
R:
AGCTCACAGTGTCTGCCTTTG
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: