RnoEX0084312 @ rn6
Exon Skipping
Gene
ENSRNOG00000023548 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:RGD Symbol;Acc:1566079]
Coordinates
chr9:100425894-100429959:+
Coord C1 exon
chr9:100425894-100425976
Coord A exon
chr9:100426766-100426861
Coord C2 exon
chr9:100429843-100429959
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCACCCTTAGCTTCTCCTAGAAC
3' ss Score
1.7
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTTCTCAGAGCTTGTAGACGGAAGAGCAAGAGTGAGTGCCAGGTTTGGTGGATTGCCCAGCAGAGCAGTAACTGTGAGATCAC
Seq A exon
AACCCACTACTCCGGTGCCGCTCAAGAACACAGAGGCCCCTGAGCAGGCCCGTCTGGCCCTTCAGCTACCCAAGAACAACAGCAAGGACACAGAAA
Seq C2 exon
GTACCCCTGGCAGCTGTTCAGAAGACACCTGTCAGAATGGAGGCACCTGTGTCCCAGGTGCCAATGCCCACAGCTGTGACTGCAGGCCTGGGTTCAAAGGCAGACACTGTGAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023548-'31-37,'31-35,32-37
Average complexity
S
Mappability confidence:
89%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=1.000 C2=0.150
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=77.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAGCAAGAGTGAGTGCC
R:
AGCTCACAGTGTCTGCCTTTG
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]