MmuEX0045060 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48494072-48495310:+
Coord C1 exon
chr6:48494072-48494188
Coord A exon
chr6:48494824-48494962
Coord C2 exon
chr6:48495108-48495310
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATCTTGCTTGCCTCTCACAGGCT
3' ss Score
8.26
5' ss Seq
TTGGTATGC
5' ss Score
5.91
Exon sequences
Seq C1 exon
GAGAGAGTTGTGAGACCAGGGACACGGTGTTTACCCTTGACTGTGCCAACCAGTGTCCTCGCAGCTGTGCTGACCTCTGGGATGGTGTTCAGTGTTTACAGGGACCCTGCAGCCCAG
Seq A exon
GCTGCCGATGTCCCCCTGGTCAGCTAGTGCAGGATGGACACTGTGTCCCCATCTCCTCTTGCCGCTGTGGCCTGCCCAGTGCCAATGCCTCGTGGGAGCTGGCCCCCACACAGGTGGTCCAGCTGGACTGCCATAATTG
Seq C2 exon
CACATGCATCAATGGGACCCTGATGTGTCCACACCTTGAGTGTCCAGTCCTGGGACCTTGGTCAGCTTGGAGTGAGTGCTCAGCTGTCTGTGGTAAGGGCACCATGGTGCGCCACAGGAGTTGTGAGGAACATCCTGATCGTGAACCATGCCAGGCTCTGGATCTGCAGCAATGGCAAGAGTGTAACCTGCAAGCCTGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'103-113,'103-112,104-113
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(63.2=90.0)
A:
PF0182612=TIL=PD(35.1=42.6),PF053758=Pacifastin_I=PU(37.5=25.5)
C2:
PF053758=Pacifastin_I=PD(59.4=27.5),PF0009014=TSP_1=WD(100=71.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTGGGATGGTGTTCAGT
R:
CAGGACAGGCTTGCAGGTTAC
Band lengths:
248-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types