GgaEX6017961 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:439192-439823:+
Coord C1 exon
chr2:439192-439308
Coord A exon
chr2:439389-439527
Coord C2 exon
chr2:439621-439823
Length
139 bp
Sequences
Splice sites
3' ss Seq
CCCACCTTCCTGCCCCGCAGGGT
3' ss Score
11.54
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GGGAGGACTGTGAGAAGCAGGGAAGGGTATTCGCCACCACCTGCGCCAACAGCTGCCCCCGCGCCTGCGCCGACCTCTGGCAGCACGTGGAGTGCGTGCAGGGGGGCTGCAAGCCAG
Seq A exon
GGTGCCGCTGCCCACAGGGACAGCTGCTGCAGGATGGGCTGTGCGTGCCCACAGCACAGTGCCGCTGCGGGCTGAGCGGGGACAACGGCACCCAGGAGCTGTGGCCGGGACAGGAGGCCACCATTGAGTGCCACAACTG
Seq C2 exon
CACCTGTGAGAATGGCACCATGGTGTGCCCAGCGCTGCCGTGCCCATCCTATGGGCCCTGGTCCACCTGGAGCCCCTGCTCGAGCAGCTGTGGCAGTGGCCGCACCTCCCGGCATCGCACCTGTGAGCCGAACCCCGGCGGGGTGCCCTGCATGGCCAGCGGGATGCAGGAGACAGCTGAGTGCAGCCCCCAGCCCTGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'92-92,'92-91,93-92=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(63.2=90.0)
A:
PF0182612=TIL=PD(35.1=42.6)
C2:
PF0009014=TSP_1=WD(100=71.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACTGTGAGAAGCAGGGA
R:
TTCGGCTCACAGGTGCGAT
Band lengths:
247-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]