HsaEX0061905 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149522367-149523366:+
Coord C1 exon
chr7:149522367-149522480
Coord A exon
chr7:149522889-149523027
Coord C2 exon
chr7:149523164-149523366
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTCTTTACCCACACCCCTAGGCT
3' ss Score
7.87
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
AGAGCTGCGAGGCCCAAGACACTGTATTCACCCTGGACTGTGCCAACCAGTGCCCACACAGCTGTGCCGACCTCTGGGACCGCGTTCAGTGTCTGCAGGGACCCTGCCGCCCAG
Seq A exon
GCTGCCGCTGTCCCCCTGGCCAGCTGGTCCAGGATGGGCGCTGTGTGCCGATCTCCTCTTGCCGCTGTGGCCTCCCCAGTGCCAATGCCTCTTGGGAGCTGGCCCCGGCCCAGGCGGTGCAGCTGGACTGCCAAAACTG
Seq C2 exon
CACCTGTGTCAACGAGTCCCTGGTGTGCCCACACCAGGAGTGTCCAGTCCTTGGGCCTTGGTCAGCCTGGAGCAGTTGCTCGGCCCCCTGTGGTGGGGGCACTATGGAGCGACATCGGACTTGTGAGGGGGGTCCTGGGGTGGCACCATGCCAGGCCCAGGACACAGAGCAACGGCAGGAGTGTAACCTGCAGCCCTGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_MULTIEX4-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.043 C2=0.015
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCACCCTGGACTGTGCCA
R:
TCTGTGTCCTGGGCCTGG
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)