BtaEX6029363 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113485292-113486298:+
Coord C1 exon
chr4:113485292-113485408
Coord A exon
chr4:113485807-113485945
Coord C2 exon
chr4:113486096-113486298
Length
139 bp
Sequences
Splice sites
3' ss Seq
CCCCCCACCCCCTCTCCCAGGCT
3' ss Score
7.82
5' ss Seq
CTGGTACGA
5' ss Score
7.84
Exon sequences
Seq C1 exon
GAGAGAGCTGCGAGGCCCAGGACACCGTGCCCACCCCTGACTGTGCCAACCAGTGCCCAAGAAGCTGTGTTGACCTCTGGGACCGCGTGGAGTGTCTGCAGGGACCATGCCGCCCAG
Seq A exon
GCTGCCGCTGTCCCCCTGGCCAGCTGGTACAGGATGGGCACTGTGTGCCTGTGTCTTCTTGCCGTTGCGGCCTCCCCAGCCCCAACGCTTCCTGGGCGCTGGCCCCGGCTGAGGTGGTGCGGCTGGACTGCAGAAACTG
Seq C2 exon
CACCTGTGTCAACGGGTCCCTGGCGTGCTCCTCCCATGAGTGTCCAACCCTCGGGCCTTGGTCAGCCTGGAGCAACTGCTCTGCTCCCTGTGGTGGGGGCACCACCAAAAGACATCGGAGCTGCAAGGAGGGCCCCGGGGTGACACCGTGCCAGGCCCAGGACATGGAGCAACAGCAGGACTGTAACCTGCAGCCCTGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'107-107,'107-106,108-107=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=FE(55.7=100)
A:
PF0182612=TIL=PD(28.6=42.6),PF053758=Pacifastin_I=PU(36.4=25.5)
C2:
PF053758=Pacifastin_I=PD(60.6=29.0),PF0009014=TSP_1=WD(100=71.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAAGAAGCTGTGTTGAC
R:
GTCCTGCTGTTGCTCCATGTC
Band lengths:
245-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]