DreEX6096577 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40256086-40258989:+
Coord C1 exon
chr24:40256086-40256202
Coord A exon
chr24:40256480-40256618
Coord C2 exon
chr24:40258793-40258989
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTTGTGTGCCGCAGGCT
3' ss Score
9.4
5' ss Seq
CTGGTCAGA
5' ss Score
3.96
Exon sequences
Seq C1 exon
GTGAGCATTGTGAGGACAGGGGGCGTGTCTTTGATGGCTCCTGTGCCAATCAGTGTCCTCGCAGCTGTGCAGATCTGTGGGACCATGTGCAGTGTCTACAGGGCGTCTGTCATCCAG
Seq A exon
GCTGCCGGTGTCCGCCTGGTCAGCTCCTGCAGGATGGAAGCTGTGTGCCGGTGGATGAGTGTCGCTGTGGGCTCCCGATGCAGAACGGGACACTGGAGATCCGGCCTGGAGAAAACATCACCCTCAGCTGCAACACCTG
Seq C2 exon
TGTGTGTGTGAACGGCTCTCTGGTGTGTACGGATCATGTGTGTCCGCTGTACGGCTCATGGGGATCGTGGAGTGTGTGTTCGGTGTCGTGCGGGACAGGTCAGAGGACACGTGTGCGCTCCTGCACACACACCAGTGTAGGATTAAGCTGTACACACACCATCCAGTCCCAGAACTGCTCACTGAGCACCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'102-107,'102-106,103-107=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(63.2=90.0)
A:
PF0182612=TIL=PD(35.1=42.6),PF053758=Pacifastin_I=PU(37.5=25.5)
C2:
PF053758=Pacifastin_I=PD(59.4=28.4),PF0009014=TSP_1=WD(100=70.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGCCAATCAGTGTCCTC
R:
TTCTGGGACTGGATGGTGTGT
Band lengths:
252-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]