MmuEX0045063 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48498644-48501235:+
Coord C1 exon
chr6:48498644-48498774
Coord A exon
chr6:48500371-48500521
Coord C2 exon
chr6:48501077-48501235
Length
151 bp
Sequences
Splice sites
3' ss Seq
AACCAGTCGCTCTTGCCCAGGAA
3' ss Score
2.84
5' ss Seq
AGGGTTGGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
AGGAGGAGCCAGTCTCCTGCAGGTACCTCACAGAACTCAGAAACCTCACCAAGGGTCCCTGCCACCTGGATCAGATAGAAGTGAGCTACTGCAGTGGACACTGCAGGTCCAGCACCAATGTCATGACTGAG
Seq A exon
GAACCCTACCTGCAGAGCCAGTGTGACTGCTGTAGCTACAGACTGGATCCGGACAGCCCCGTGCGGATCTTGAACCTCCTTTGCCCCGATGGCCACACAGAGCCAGTGGTGTTGCCAGTGATTCACAGCTGCCAGTGCAGTGCCTGTCAGG
Seq C2 exon
GTGGCGATTTCTCAAAGCACTGACAGGCTCCATCAGTTGCAGCCACTGTTGTCTGCCTTGTGACCACAGGCCTTGGTGGCGCTCCCCACTTCCTTCAGTGTCCAGTTCCCCGCCTCTGGCCTGTGAACCATGCTCTGGCATTAGCACATTCCAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797_CASSETTE5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCTGCAGGTACCTCAC
R:
CATGGTTCACAGGCCAGAGG
Band lengths:
253-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types