RnoEX0086321 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78131563-78133654:+
Coord C1 exon
chr4:78131563-78131693
Coord A exon
chr4:78132836-78132986
Coord C2 exon
chr4:78133504-78133654
Length
151 bp
Sequences
Splice sites
3' ss Seq
AACCAGCCTCTCTTGCCCAGGAA
3' ss Score
4.92
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
AGGAGGAGCCAGTCTCCTGCAGGCACCTCACAGAACTCAGAAACCTCACCAAGGGTCCCTGTCACCTGGATCAGGTAGAAGTGAGCTACTGCAGTGGACACTGCAGGTCCAGCACCAATGTCATGACTGAG
Seq A exon
GAACCCTACCTGCAGAGCCAGTGTGACTGCTGTAGCTACAGACTGGATCCGGACAGCCCCGTGCGGATCCTGAACCTCCTTTGCCCTGATGGCCGCACGGAGCCAGTGTTGTTGCCAGTGATTCACAACTGCCACTGCAGTGCCTGTCAGG
Seq C2 exon
GTGGTGAGTTCTCAAAGCACTGACAGGCTCTGCTGGATGCTGCCACTGTTGTCTCCCCTGTGAGCACAGGGCTCGGTGGCACCCTCTACTTCCTTCTGTGCCCAGTTAACGCCTCTGACCTGTGAACCATGCTGTGGGGTTAGCACATTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'108-112,'108-111,109-112
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACCTCACAGAACTCAGA
R:
CATGGTTCACAGGTCAGAGGC
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]