BtaEX0034659 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113488307-113490743:+
Coord C1 exon
chr4:113488307-113488437
Coord A exon
chr4:113489823-113489973
Coord C2 exon
chr4:113490611-113490743
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATCCGCTCCCTCTCGCCCAGGAG
3' ss Score
6.8
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
AAGAGCAGCCCGTCTCCTGCAGGCACCTCACGGAGCTTCGCAACCTCACCAAGGGCGCCTGCTACCTAGAGCAGGTGGAAGTGAACTACTGCAGCGGGCACTGCCCGTCCAGCACCAACGTCCTGCCTGAG
Seq A exon
GAGCCGTACCTGCAGAGTCAGTGTGACTGCTGTAGCTACCGCCTAGACCCTGAGAACCCGGTGCGCATCCTGAACCTGCGCTGCCCTGGCGGCCGCACAGAGCTGGTGGTGCTGCCGGTCATTCACAGCTGCCAGTGCAGCGCCTGCCAGG
Seq C2 exon
GAGGTGATTTCTCAGAGCGCTGACGGCTTCCCTGATGAGGCCTGCACTGGCCATCATGACCCCTCCTCCCATGCCCCGTCCCCCATCCCCTATTCTAGTTCTAGCATATTCCAAATAAAGTGACATTGGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGCAGGCACCTCAC
R:
GCTGCCAATGTCACTTTATTTGGA
Band lengths:
252-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development