HsaEX7004498 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149831135-149833979:+
Coord C1 exon
chr7:149831135-149831265
Coord A exon
chr7:149832768-149832918
Coord C2 exon
chr7:149833807-149833979
Length
151 bp
Sequences
Splice sites
3' ss Seq
ACCCGCTCCCTCTCGCCCAGGAG
3' ss Score
7.34
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
AGGAGCAGTCGCCCTCCTGCCAGCTCCTCACGGAGCTTCGAAACTTCACCAAAGGGACCTGTTACCTGGACCAGGTAGAAGTGAGCTACTGCAGTGGGTACTGCCCATCCAGCACCCATGTCATGCCAGAG
Seq A exon
GAGCCATACCTGCAGAGCCAGTGTGACTGCTGCAGCTACCGTCTAGACCCGGAGAGCCCTGTGCGGATCCTGAACCTGCGCTGTCTGGGTGGCCACACAGAGCCCGTGGTGCTGCCGGTCATCCACAGCTGCCAGTGCAGCTCCTGCCAGG
Seq C2 exon
GAGGTGACTTCTCAAAGCGCTAACAGGCTCCGCTGGGTGAGTCCACAGCTGTCCCTCTTGTGATCATGGGACTCAGCAGCACTGACCACGTCCTTCCACGCTCTCTCACCTGCCCCCAACTGGGGGCCCATGACTTGGCATTAGCATGTTCCAAATAAAGTGATACTGGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'130-152,'130-149,131-152=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGCTTCGAAACTTCACC
R:
TGGAACATGCTAATGCCAAGTCA
Band lengths:
255-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains