GgaEX6017951 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:442214-442670:+
Coord C1 exon
chr2:442214-442344
Coord A exon
chr2:442427-442577
Coord C2 exon
chr2:442648-442670
Length
151 bp
Sequences
Splice sites
3' ss Seq
ACGGAGCTGTGCCCACGCAGGAG
3' ss Score
4.16
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
AGGAGCCGTCCTCCATGTGCCGGCGCTTCACCGAGCTGCGCAACATCACCAAGGGTCCCTGCTCACTGCCCAACGTGGAGGTCAGCTTCTGCAGCGGCCGCTGCCCATCCCGCACCGCCGTCACCCCCGAG
Seq A exon
GAGCCGTACCTGCAGACGCTGTGTGAGTGCTGCAGTTACCGCCTGGACCCCGGCAGCCCCGTGCGCATCCTCAGCCTGCCCTGTGCGGGCGGTGCAGCCGAGCCCGTCGTGCTGCCCATCATCCACAGTTGCGAGTGCAGCAGCTGCCAGG
Seq C2 exon
GTGGGGATTTCTCCAAGCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'103-104,'103-103,104-104=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGTCCTCCATGTGC
R:
CAGCGCTTGGAGAAATCCCC
Band lengths:
151-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]