MmuEX1008336 @ mm10
Exon Skipping
Gene
ENSMUSG00000056268 | Dennd1b
Description
DENN/MADD domain containing 1B [Source:MGI Symbol;Acc:MGI:2447812]
Coordinates
chr1:139060275-139062971:+
Coord C1 exon
chr1:139060275-139060328
Coord A exon
chr1:139061159-139061250
Coord C2 exon
chr1:139062861-139062971
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCCATTTTGTTTTGCGATAGAGG
3' ss Score
5.88
5' ss Seq
CAGGTCGTC
5' ss Score
-0.45
Exon sequences
Seq C1 exon
CACTCCTGTTTCATCACACCTGACATAACTGGACTCCCAACGATACCGGAGAGT
Seq A exon
AGGCCACAGCTGCTGCTCACCAGCCCTTCTGAAACCCATCTGCCTTCACCTCCAAAGTGCTACTTTCTTAGGAGCCGAGGATCTGAACTCAG
Seq C2 exon
AGAAACCTGACCGAGTACTTTGTTGCCGTGGATGTCAACAACATGCTGCGACTGTACGCCAGCATGCTGCATGAGAGGCGCATCATTATTACCTCGAGCAAATTAAGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056268_MULTIEX1-9/15=8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.097 C2=0.004
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(17.2=100)
A:
PF0214116=DENN=PD(21.2=67.7)
C2:
PF0214116=DENN=PD(29.5=89.1)
Main Inclusion Isoform:
ENSMUST00000168527fB8668
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTTTCATCACACCTGACA
R:
AGTGCTTAATTTGCTCGAGGT
Band lengths:
162-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types