MmuEX1011176 @ mm10
Exon Skipping
Gene
ENSMUSG00000072723 | Gm10044
Description
predicted gene 10044 [Source:MGI Symbol;Acc:MGI:3641749]
Coordinates
chr14:7746380-7756762:-
Coord C1 exon
chr14:7756669-7756762
Coord A exon
chr14:7751471-7751583
Coord C2 exon
chr14:7746380-7746491
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTATAAATATTTTGTCAAAGACT
3' ss Score
2.97
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCTGGAAGTTGAGTGTCTCAAGTTAGAAGACTCAGTAAAGAACCAAGCAGAAGAAATTGAAGAGATTGAGAATCAACTGTTACGAGAAGATTTG
Seq A exon
ACTGGAGACAAAAAGAGAGAACGAAGCGAAGTGACCCAGTCAACACAATCTCTGGCACGTGCTTTGGAGCAGGAGATGGAGAAAAGTGAAGAATTAAAAAAGGAACTCTGTGG
Seq C2 exon
ATTTATGGAAGTCTTAAAAATGACAGGAAAGAAGTTAGATGAATGTGAAAATAGAGAATTGTATTTCTATGAAGATATGAAAACGAGAACATTTGAAATGCTACAACATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072723_MULTIEX1-4/5=3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGTTGAGTGTCTCAA
R:
TGTTGTAGCATTTCAAATGTTCTCGT
Band lengths:
202-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types