MmuEX1011177 @ mm10
Exon Skipping
Gene
ENSMUSG00000072723 | Gm10044
Description
predicted gene 10044 [Source:MGI Symbol;Acc:MGI:3641749]
Coordinates
chr14:7744792-7751583:-
Coord C1 exon
chr14:7751471-7751583
Coord A exon
chr14:7746380-7746491
Coord C2 exon
chr14:7744792-7744983
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTAATTCTTTGTTCTTATAGATT
3' ss Score
8.58
5' ss Seq
GAGGTAGTT
5' ss Score
5.77
Exon sequences
Seq C1 exon
ACTGGAGACAAAAAGAGAGAACGAAGCGAAGTGACCCAGTCAACACAATCTCTGGCACGTGCTTTGGAGCAGGAGATGGAGAAAAGTGAAGAATTAAAAAAGGAACTCTGTGG
Seq A exon
ATTTATGGAAGTCTTAAAAATGACAGGAAAGAAGTTAGATGAATGTGAAAATAGAGAATTGTATTTCTATGAAGATATGAAAACGAGAACATTTGAAATGCTACAACATGAG
Seq C2 exon
ATAAATTACCTTAAAGATTCATGGGAATCTATGCATTGCAAGTATCTACATCAAGATATAAACATCCAGTTGACTGAGCAAGAATTGTTAAAAATAAAAACAGAACATGAGAATTATGAACACCTTCACAAGACTCAAGGAAATGTGGAAAAGGAGGTGCAAACCCTCAAAGGGCTGGCTCAGGAGAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072723_MULTIEX1-5/5=4-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGAAGTGACCCAGTCAAC
R:
GGGTTTGCACCTCCTTTTCCA
Band lengths:
256-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types