MmuEX6004199 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48439697-48440554:+
Coord C1 exon
chr6:48439697-48439828
Coord A exon
chr6:48439924-48440170
Coord C2 exon
chr6:48440402-48440554
Length
247 bp
Sequences
Splice sites
3' ss Seq
CATCTGTTGCCTCCCCACAGGGT
3' ss Score
11.9
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
AGGAAGGCTGCCCAGCGGGCATGGAGATGGTGAGCTGTGCCAACCACTGCCCCTACAGCTGCTCAGACCTGCAGGAGGGAGGCATGTGTCAGGAGGACCAGGCCTGCCAGTTGGGCTGTCGCTGCTCTGAAG
Seq A exon
GGTTTCTGGAGCAGGATGGAGGCTGTGTGCCAGTTGGACACTGTGAATGCACAGATGCCCAGGGCCGCAGCTGGGCCCCAGGGAGCCAGCACCAGGATGCCTGCAACAACTGTTCCTGTCAGGCTGGGCAACTCTCCTGCACTGCTCAGCTTTGCTCACCTCCTGCCCACTGTGCCTGGAGTCACTGGTCTGCCTGGAGTTCCTGCAGTCACTCCTGTGGACCTCAAGGGCAACAGAGTCGCTTTAG
Seq C2 exon
GTCCTCCACGTCAGGCTCGTGGGCCCTGGAGTGTCAGAAGGAGCAGTCACAGAGCCAGCCTTGCCCTGAGGTCCCCTGCCCACCCCTGTGCCTACATGAAGCCCACCTCCATGAGCTGGGGGACAACTGGCTGCATGGAGAATGCCAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'85-86,'85-85,86-86=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(73.2=91.1)
A:
PF0182612=TIL=PD(25.0=16.9),PF053758=Pacifastin_I=WD(100=39.8),PF0009014=TSP_1=PU(44.9=26.5)
C2:
PF0009014=TSP_1=PD(53.1=50.0),PF0009313=VWC=PU(31.8=40.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATGGAGATGGTGAGCTG
R:
CACTGCTGGCATTCTCCATG
Band lengths:
268-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: