DreEX6096582 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40244959-40246693:+
Coord C1 exon
chr24:40244959-40244980
Coord A exon
chr24:40245178-40245424
Coord C2 exon
chr24:40246571-40246693
Length
247 bp
Sequences
Splice sites
3' ss Seq
TGCATCTGTTGTGTGTGTAGGTC
3' ss Score
8.98
5' ss Seq
CAGGTGGAA
5' ss Score
1.62
Exon sequences
Seq C1 exon
ATGGGAATCGGCTGCTTGTGTA
Seq A exon
GTCAGCTGCTGCAGGACGGTGTGTGTGTTCAGACGTGGCAGTGTGATTGTGTTGATGCGTCTGGTCAGGTGTGGGCGTCGGGCAGCTCTCATCAGCAGGACTGTAACACCTGCAGCTGCACAGACGCTCAGATCACCTGCAGCAATCACACCTGTGCGGAAGAGAAGAGCAGCTGCACCTGGAGCTCCTGGTCCACGTGGGCCTCCTGCAGCTCCTCCTGCGGCCCGGGACAGAGGACCCGCTTCAG
Seq C2 exon
CTGTCAGTTTGAGGAGGTTCAGCACAAACCTTGTGATCCGGGTCCTTGTCCGCCTCTGTGTGTTCATAAGAACCGAGAACTGTCTGTCGGAGACACCTGGACCGATGGAGAATGCAAACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'89-94,'89-92,90-94=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=FE(12.5=100)
A:
PF0182612=TIL=PD(25.0=16.9),PF053758=Pacifastin_I=WD(100=42.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAATCGGCTGCTTGTG
R:
TTTGCATTCTCCATCGGTCCA
Band lengths:
140-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]