BtaEX0034657 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113480004-113480901:+
Coord C1 exon
chr4:113480004-113480135
Coord A exon
chr4:113480233-113480479
Coord C2 exon
chr4:113480749-113480901
Length
247 bp
Sequences
Splice sites
3' ss Seq
TGGAGGGCCGCCCCCCGCAGGGT
3' ss Score
4.96
5' ss Seq
CCGGTATGG
5' ss Score
8.44
Exon sequences
Seq C1 exon
AGGAGGGCTGCCCTGCAGGCATGGAGGTGGTCAGCTGTGCCAACCGCTGCCCCCGCCGCTGCTCAGACCTCCAGGAGGGGATCGTGTGTCAGGAGGACCAGGCCTGCCAGCAGGGCTGCCGCTGTCCCGAGG
Seq A exon
GGTCCCTGGAGCAGGACGGCGGCTGCGTGCCCCTTGGGCACTGCGAGTGCACGGATGCCCAGGGCCACAGCTGGGCCCCGGGGAGCCAGCACCAGGAGGCCTGCAACAACTGCACGTGCCGGGCGGGGCAGCTCTCCTGCACCGCCCAGCCCTGCCCGCCTCCTGCCCACTGCGCCTGGAGCCGCTGGTCAGCCTGGAGTCCCTGCAGCCGCTCGTGCGGGCCCGCAGGGCAGCAGAGCCGCTTCCG
Seq C2 exon
GTCTTCCACGTCGGGCTCGTGGGCCCCGGAGTGTCGGGAGGAGCAGTCCCAGAGCCAGCCCTGCCCTCAGTCCCCGTGCCCACCCCTGTGCCTGCAGGGCACTCGCCCCCGCTCCCTGGGGGACAGCTGGCTGCAGGATGGATGCCAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(73.2=91.1)
A:
PF0182612=TIL=PD(25.0=16.9),PF053758=Pacifastin_I=WD(100=39.8),PF0009014=TSP_1=PU(44.9=26.5)
C2:
PF0009014=TSP_1=PD(53.1=50.0),PF0009313=VWC=PU(33.3=40.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCATGGAGGTGGTCAG
R:
CACTGCTGGCATCCATCCTG
Band lengths:
270-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development