GgaEX7001530 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:434916-436378:+
Coord C1 exon
chr2:434916-435282
Coord A exon
chr2:435895-436135
Coord C2 exon
chr2:436226-436378
Length
241 bp
Sequences
Splice sites
3' ss Seq
GTGACGCTGCCCTCCCGCAGGCA
3' ss Score
9.29
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
NGTGGGAGTGGGAGTGGGAGTGGGAGTGGGAGTGGGAGTGGGGGTGGGGAGTGGGAGTGGGAGTGGGAGTGGGATGGGATGGGGGTGGGAATGGAACAGGGATGGGAGCAGAGGATGGGAATGGAGGTAGGGATGGGGATGGAGATGGGAACAGAGATGCAGACAGGAATGGGGATGGGGATGGGGTTGGAGTGGTACCTCAGAGCTGGTGCCGCTGACAAATGCCCCCTTCCAGGTGACAGCTGCCCCCCTGGCATGGCCCTGGTGACCTGTGCCAACCACTGCCCCCGACACTGTGGGGACCTACAGGAGGGCATCGTCTGCAGGGAGGAGGAGCACTGCGAGCCCGGCTGCCGCTGCCCCAACA
Seq A exon
GCACACTGGAGCAGGACGGGGGCTGTGTGCCCCTCGCACACTGCGAGTGCACAGACGCACAGGGCCATGGTTGGGTGCCAGGCAGCACGCATCATGATGGCTGCAACAACTGCACCTGCCTGGAGGGCCGCCTGCGCTGCACCGACCGCCTCTGCCCACCGCTGCGCTGCCCCTGGAGCCGCTGGTCACGCTGGTCTCCGTGCAGTGTCACCTGTGGGGACGGCCAGCAGACGCGCTTCAG
Seq C2 exon
GACGCCCACGGCGGGCTCATGGGATGAGGAGTGCCAGGGGGAGCAGATGGAGAACCGGGGCTGTGCTGCAGGGCCTTGCCCACCCCTGTGCCCCCAGGGCAGCTGGGAGAGGCGGCTGGGGGACACGTGGCTGCAGGGCGAGTGCCAGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'81-81,'81-80,82-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(10.0=3.3),PF043607=Serglycin=PD(43.8=22.8),PF0182612=TIL=PU(73.2=33.3)
A:
PF0182612=TIL=PD(25.0=17.3),PF053758=Pacifastin_I=WD(100=40.7),PF0009014=TSP_1=PU(43.8=25.9)
C2:
PF0009014=TSP_1=PD(54.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGAGCAGAGGATGGGAAT
R:
CTGGCACTCCTCATCCCATGA
Band lengths:
303-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]