RnoEX6013459 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78122811-78123680:+
Coord C1 exon
chr4:78122811-78122942
Coord A exon
chr4:78123029-78123275
Coord C2 exon
chr4:78123528-78123680
Length
247 bp
Sequences
Splice sites
3' ss Seq
AATCTGCTGCCTCCACACAGGGT
3' ss Score
8.35
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
AGAAAGACTGCCCAGCGGGCATGGAAATGGTGAGCTGTGCCAACCGCTGCCCCTACAGCTGCTCAGACCTGCAGGAGGCAGTCATGTGTCAGGAGGACCAGGCCTGCCAGTTGGGCTGTCGCTGCTCTGAAG
Seq A exon
GGTTTCTGGAGCAGGATGGAGGGTGTGTTCCAGTCGGGCACTGTGAATGCACAGATGCCCAGGGCCGCAGCTGGGCCCCAGGGAGCCAGCATCAGGATGCCTGCAACAACTGTTCCTGTCAGGCTGGGCAACTCTCCTGTACTGCTCAGCCCTGCCCACCTCCTGCCCACTGTGCCTGGAGCCACTGGTCTGCCTGGAGTGCCTGCAGTCATTCATGTGGACCTCATGGGCAGCAGAGTCGCTTTAG
Seq C2 exon
GTCCTCCACATCAGGCTCATGGGCCCTGGAGTGTCAGAAGGAGCAGTCACAGAGCCAGCCGTGCCCTGAGGACCCCTGCCCACCCCTGTGCCTACATGAAGCCCACCTTCATGTTCTGGGGGACAACTGGCTGCATGGAGAATGCCAGCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'86-90,'86-89,87-90=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(73.2=91.1)
A:
PF0182612=TIL=PD(25.0=16.9),PF053758=Pacifastin_I=WD(100=41.0),PF0009014=TSP_1=PU(44.9=26.5)
C2:
PF0009014=TSP_1=PD(53.1=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGACTGCCCAGCGG
R:
CACTGCTGGCATTCTCCATG
Band lengths:
285-532
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]