MmuEX6004312 @ mm10
Exon Skipping
Gene
ENSMUSG00000029817 | Tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:MGI Symbol;Acc:MGI:1933972]
Coordinates
chr6:49245482-49249174:-
Coord C1 exon
chr6:49248986-49249174
Coord A exon
chr6:49246874-49246964
Coord C2 exon
chr6:49245482-49245610
Length
91 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTTTTCTCTTGTAGGCT
3' ss Score
12.05
5' ss Seq
CAGGCATTT
5' ss Score
-0.24
Exon sequences
Seq C1 exon
GCAAACCCAGATCCCAACACTTGCTTGGGAGTATTTGGCCTCAGTTTGTACACAACAGAGAGAGATCTTCGTGAAGTGTTTTCTCGATATGGACCTCTGAGTGGTGTTAATGTAGTTTATGATCAGCGAACTGGGAGGTCACGTGGATTTGCTTTTGTGTATTTTGAGAGAATAGATGACTCTAAGGAG
Seq A exon
GCTATGGAGAGAGCAAATGGGATGGAGCTGGACGGTAGAAGAATCCGTGTGGATTATTCTATCACCAAGAGAGCGCACACACCCACACCAG
Seq C2 exon
CAGCGGTGGTGGAGGTGGCGGAGGAGGAGGTGGCGGAGGAGGAGGTGGTGGCGGTGGTAGACGACGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATACGAAGATTATGATTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029817-'15-10,'15-9,16-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.778 C2=0.790
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(76.1=85.7)
A:
PF0007617=RRM_1=PD(21.1=38.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATATGGACCTCTGAGTGGT
R:
GAATCTCGTCGTCTACCACCG
Band lengths:
178-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types